ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-622
source: miRBase, original name: hsa-mir-622 (MI0003636)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGTCTGCTGAGGTTGGAGC miRNA* ACTGGTCTCAGCAGATTGAGG mismatches: 4 bulges: 0 |
pre-miRNA
AGAGAAGCTGGACAAGTACTGGTCTCAGCAGATTGAGGAGAGCACCACAGTGGTCATCACACAGTCTGCTGAGGTTGGAGCTGCTGAGATGACACT
dot-bracket secondary structure
.......((((...(((.((..(((((((((((((.(((((.(((....))).)).)).).)))))))))))))..)).))).)).))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR, SAGE
references
[1] Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE, Proc Natl Acad Sci U S A. 103:3687-3692(2006)., "The colorectal microRNAome"
AGAGAAGCTGGACAAGTACTGGTCTCAGCAGATTGAGGAGAGCACCACAGTGGTCATCACACAGTCTGCTGAGGTTGGAGCTGCTGAGATGACACT
dot-bracket secondary structure
.......((((...(((.((..(((((((((((((.(((((.(((....))).)).)).).)))))))))))))..)).))).)).))........
SIMILARITIES| miRBase ptr-mir-622: 4e-40 PMRD no hits microPC no hits | UniProt sp|P05783|K1C18_HUMAN: 0.00000002 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR, SAGE
references
[1] Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE, Proc Natl Acad Sci U S A. 103:3687-3692(2006)., "The colorectal microRNAome"
