ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-1180
source: miRBase, original name: hsa-mir-1180 (MI0006273)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCCGGCTCGCGTGGGTGTGT miRNA* CCCACCCGGCCGGGAATA mismatches: 4 bulges: 1 |
pre-miRNA
GCTGCTGGACCCACCCGGCCGGGAATAGTGCTCCTGGTTGTTTCCGGCTCGCGTGGGTGTGTCGGCGGC
dot-bracket secondary structure
((((((((((((((.((((((((((((..((.....)))))))))))).)).))))))...))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC, Corless CL, Fire AZ, van de Rijn M, Oncogene. 27:2015-2026(2008)., "MicroRNA expression signature of human sarcomas"
[2] Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup N, Moller S, Krogh A, Litman T, BMC Med Genomics. 2:35(2009)., "Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing"
GCTGCTGGACCCACCCGGCCGGGAATAGTGCTCCTGGTTGTTTCCGGCTCGCGTGGGTGTGTCGGCGGC
dot-bracket secondary structure
((((((((((((((.((((((((((((..((.....)))))))))))).)).))))))...))))))))
SIMILARITIES| miRBase ppy-mir-1180: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1180: 5e-30 |
Identical with: ppy-mir-1180 from miRBase (MNEST031280) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, 454
deep sequencing data evidence
references
[1] Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC, Corless CL, Fire AZ, van de Rijn M, Oncogene. 27:2015-2026(2008)., "MicroRNA expression signature of human sarcomas"
[2] Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup N, Moller S, Krogh A, Litman T, BMC Med Genomics. 2:35(2009)., "Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing"
