ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-1251
source: miRBase, original name: hsa-mir-1251 (MI0006386)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCTAGCTGCCAAAGGCGCT miRNA* CGCTTTGCTCAGCCAGTGTAG mismatches: 5 bulges: 0 |
pre-miRNA
GTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGC
dot-bracket secondary structure
((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..)).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, cloned
references
[1] Kawaji H, Nakamura M, Takahashi Y, Sandelin A, Katayama S, Fukuda S, Daub CO, Kai C, Kawai J, Yasuda J, Carninci P, Hayashizaki Y, BMC Genomics. 9:157(2008)., "Hidden layers of human small RNAs"
[2] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
GTGGACTCTAGCTGCCAAAGGCGCTTCTCCTTCTGAACAGAGCGCTTTGCTCAGCCAGTGTAGACATGGC
dot-bracket secondary structure
((..((.((.((((...(((((((((.((.....))...)))))))))...)))).)).))..)).....
SIMILARITIES| miRBase ppy-mir-1251: 3e-34 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1251: 3e-28 |
Identical with: mmu-mir-1251 from miRBase (MNEST032399) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, cloned
references
[1] Kawaji H, Nakamura M, Takahashi Y, Sandelin A, Katayama S, Fukuda S, Daub CO, Kai C, Kawai J, Yasuda J, Carninci P, Hayashizaki Y, BMC Genomics. 9:157(2008)., "Hidden layers of human small RNAs"
[2] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
