ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: miR-1302d
source: miRBase, original name: hsa-mir-1302-1 (MI0006362)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGGACATACTTATGCTAAA miRNA* TATGTAAGAATATCCCATAC mismatches: 5 bulges: 1 |
pre-miRNA
CAGAAAGCCCAGTTAAATTTGAATTTCAAGTAAACAATGAATAATTGTGTATGTAAGAATATCCCATACAATATTTGGGACATACTTATGCTAAAAATTA
TTCCTTGCTTATCTGAAATTCAAATGTAACTAGGATTCCTGTA
dot-bracket secondary structure
(((....((.(((((.((((((((((((..(((.(((.((((((((...((((((((.((.(((((.........))))).)).)))))).))..)))))
))).))).)))..)))))))))))).))))).))....)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
CAGAAAGCCCAGTTAAATTTGAATTTCAAGTAAACAATGAATAATTGTGTATGTAAGAATATCCCATACAATATTTGGGACATACTTATGCTAAAAATTA
TTCCTTGCTTATCTGAAATTCAAATGTAACTAGGATTCCTGTA
dot-bracket secondary structure
(((....((.(((((.((((((((((((..(((.(((.((((((((...((((((((.((.(((((.........))))).)).)))))).))..)))))
))).))).)))..)))))))))))).))))).))....)))..
SIMILARITIES| miRBase ptr-mir-1302-1: 7e-77 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1302: 0.0000005 |
Identical with: ptr-mir-1302-1 from miRBase (MNEST030714) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
