ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-1307
source: miRBase, original name: hsa-mir-1307 (MI0006444)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCGGCGTGGCGTCGGTCGTG miRNA* CGACCGGACCTCGACCGGCTCG mismatches: 5 bulges: 2 |
pre-miRNA
CATCAAGACCCAGCTGAGTCACTGTCACTGCCTACCAATCTCGACCGGACCTCGACCGGCTCGTCTGTGTTGCCAATCGACTCGGCGTGGCGTCGGTCGT
GGTAGATAGGCGGTCATGCATACGAATTTTCAGCTCTTGTTCTGGTGAC
dot-bracket secondary structure
(((((..((..(((((((((..(((.((((((((.(.(((.(((((((.((.((.(((..(((..((......))..)))..))))).))..))))))).
))).).))))))))...)))...))...)))))))...))..)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, 454
deep sequencing data evidence
references
[1] Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G, J Virol. 83:3333-3341(2009)., "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas"
[2] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
CATCAAGACCCAGCTGAGTCACTGTCACTGCCTACCAATCTCGACCGGACCTCGACCGGCTCGTCTGTGTTGCCAATCGACTCGGCGTGGCGTCGGTCGT
GGTAGATAGGCGGTCATGCATACGAATTTTCAGCTCTTGTTCTGGTGAC
dot-bracket secondary structure
(((((..((..(((((((((..(((.((((((((.(.(((.(((((((.((.((.(((..(((..((......))..)))..))))).))..))))))).
))).).))))))))...)))...))...)))))))...))..)))))..
SIMILARITIES| miRBase ppy-mir-1307: 5e-81 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1307: 1e-38 |
Identical with: ptr-mir-1307 from miRBase (MNEST030724) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, 454
deep sequencing data evidence
references
[1] Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G, J Virol. 83:3333-3341(2009)., "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas"
[2] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA, Genome Res. 18:610-621(2008)., "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"
