ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: miR-2277
source: miRBase, original name: hsa-mir-2277 (MI0011284)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCGCGGGCTGAGCGCTGCCAGTC miRNA* CTGACAGCGCCCTGCCTGGCTCG mismatches: 3 bulges: 1 |
pre-miRNA
GTGCTTCCTGCGGGCTGAGCGCGGGCTGAGCGCTGCCAGTCAGCGCTCACATTAAGGCTGACAGCGCCCTGCCTGGCTCGGCCGGCGAAGCTC
dot-bracket secondary structure
..(((((..((.((((((((.(((((.(.((((((.(((((..............))))).)))))).).))))))))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup N, Moller S, Krogh A, Litman T, BMC Med Genomics. 2:35(2009)., "Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing"
[2] Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH, PLoS One. 5:e9637(2010)., "Discovery of novel microRNAs in female reproductive tract using next generation sequencing"
GTGCTTCCTGCGGGCTGAGCGCGGGCTGAGCGCTGCCAGTCAGCGCTCACATTAAGGCTGACAGCGCCCTGCCTGGCTCGGCCGGCGAAGCTC
dot-bracket secondary structure
..(((((..((.((((((((.(((((.(.((((((.(((((..............))))).)))))).).))))))))))))).)))))))..
SIMILARITIES| miRBase hsa-mir-2277: 7e-48 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup N, Moller S, Krogh A, Litman T, BMC Med Genomics. 2:35(2009)., "Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing"
[2] Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH, PLoS One. 5:e9637(2010)., "Discovery of novel microRNAs in female reproductive tract using next generation sequencing"
