ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: miR-3118
source: miRBase, original name: hsa-mir-3118-6 (MI0015981)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGACTGCATTATGAAAATTCT miRNA* AATTTTCATAATGCAATCACACA mismatches: 2 bulges: 0 |
pre-miRNA
CATACTACAATAATTTTCATAATGCAATCACACACAATCACCGTGTGACTGCATTATGAAAATTCTTCTAGTGTG
dot-bracket secondary structure
(((((((.((.(((((((((((((((.((((((.........)))))).))))))))))))))).)).)))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK, PLoS One. 5:e9685(2010)., "Characterization of the Melanoma miRNAome by Deep Sequencing"
CATACTACAATAATTTTCATAATGCAATCACACACAATCACCGTGTGACTGCATTATGAAAATTCTTCTAGTGTG
dot-bracket secondary structure
(((((((.((.(((((((((((((((.((((((.........)))))).))))))))))))))).)).)))))))
SIMILARITIES| miRBase hsa-mir-3118-4: 3e-37 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: hsa-mir-3118-4 from miRBase (MNEST029240) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK, PLoS One. 5:e9685(2010)., "Characterization of the Melanoma miRNAome by Deep Sequencing"
