ABOUT THIS RECORDspecies: Homo sapiens
source: miRBase, original name: hsa-mir-3616 (MI0016006)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTGCACTCATGATATGT miRNA* GTGTCACGAGGGCATTTCATGA mismatches: 2 bulges: 0 |
pre-miRNA
TGTCACTCCGCCAGCATCATGAAGTGCACTCATGATATGTTTGCCCCATCAGCGTGTCACGAGGGCATTTCATGATGCAGGCGGGGTTGGCA
dot-bracket secondary structure
.(((((((((((.((((((((((((((.(((.(((((((((.........))))))))).))).)))))))))))))).))))))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Witten D, Tibshirani R, Gu SG, Fire A, Lui WO, BMC Biol. 8:58(2010)., "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls"
TGTCACTCCGCCAGCATCATGAAGTGCACTCATGATATGTTTGCCCCATCAGCGTGTCACGAGGGCATTTCATGATGCAGGCGGGGTTGGCA
dot-bracket secondary structure
.(((((((((((.((((((((((((((.(((.(((((((((.........))))))))).))).)))))))))))))).))))))).)))).
SIMILARITIES| miRBase hsa-mir-3616: 3e-47 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Witten D, Tibshirani R, Gu SG, Fire A, Lui WO, BMC Biol. 8:58(2010)., "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls"
