ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-3622
source: miRBase, original name: hsa-mir-3622b (MI0016014)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCACCTGAGCTCCCGTGCCTG miRNA* GGCATGGGAGGTCAGGTGAGC mismatches: 1 bulges: 0 |
pre-miRNA
AGTGATATAATAGAGGGTGCACAGGCATGGGAGGTCAGGTGAGCTCAGCTCCCTGCCTCACCTGAGCTCCCGTGCCTGTGCACCCTCTATTGGCT
dot-bracket secondary structure
.......((((((((((((((((((((((((((.(((((((((..(((....))).))))))))).))))))))))))))))))))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Witten D, Tibshirani R, Gu SG, Fire A, Lui WO, BMC Biol. 8:58(2010)., "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls"
AGTGATATAATAGAGGGTGCACAGGCATGGGAGGTCAGGTGAGCTCAGCTCCCTGCCTCACCTGAGCTCCCGTGCCTGTGCACCCTCTATTGGCT
dot-bracket secondary structure
.......((((((((((((((((((((((((((.(((((((((..(((....))).))))))))).))))))))))))))))))))))))))...
SIMILARITIES| miRBase hsa-mir-3622b: 5e-49 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: hsa-mir-3622a from miRBase (MNEST029404) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Witten D, Tibshirani R, Gu SG, Fire A, Lui WO, BMC Biol. 8:58(2010)., "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls"
