ABOUT THIS RECORDspecies: Homo sapiens
source: miRBase, original name: hsa-mir-5047 (MI0017932)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCAGCTGCGGTTGTAAGGT miRNA* GAGACACAGTGCATAA mismatches: 4 bulges: 5 |
pre-miRNA
GAAGCGCTTGCCTAGACGAGACACAGTGCATAAAAACAACTTTTGGGGGACAGGTATGTTTTCTTGCAGCTGCGGTTGTAAGGTCTTGGCAAGACAAGCA
dot-bracket secondary structure
...((.((((((.((((..(((.(((((((..(((((((((....(....).))).))))))..)))).)))..))).....)))).))))))....)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, RTPCR
references
[1] Moore HC, Johnston M, Nicol SM, Bourdon JC, Thompson AM, Hutvagner G, Fuller-Pace FV, RNA. 17:555-562(2011)., "An evolutionarily conserved, alternatively spliced, intron in the p68/DDX5 DEAD-box RNA helicase gene encodes a novel miRNA"
GAAGCGCTTGCCTAGACGAGACACAGTGCATAAAAACAACTTTTGGGGGACAGGTATGTTTTCTTGCAGCTGCGGTTGTAAGGTCTTGGCAAGACAAGCA
dot-bracket secondary structure
...((.((((((.((((..(((.(((((((..(((((((((....(....).))).))))))..)))).)))..))).....)))).))))))....)).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, RTPCR
references
[1] Moore HC, Johnston M, Nicol SM, Bourdon JC, Thompson AM, Hutvagner G, Fuller-Pace FV, RNA. 17:555-562(2011)., "An evolutionarily conserved, alternatively spliced, intron in the p68/DDX5 DEAD-box RNA helicase gene encodes a novel miRNA"
