ABOUT THIS RECORDspecies: Homo sapiens
source: miRBase, original name: hsa-mir-5096 (MI0018004)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTTCACCATGTTGGTCAGGC miRNA* CTGACCTCAGGTGATCCAT mismatches: 4 bulges: 2 |
pre-miRNA
AGTAGAGGTGGGGTTTCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCATCCACC
dot-bracket secondary structure
......(((((((..(((((.((..(((((((..(((.....)))))))))).)))))))..).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Reshmi G, Chandra SS, Babu VJ, Babu PS, Santhi WS, Ramachandran S, Lakshmi S, Nair AS, Pillai MR, Genomics. [Epub prior to print](2011)., "Identification and analysis of novel microRNAs from Fragile Sites of Human Cervical Cancer: Computational and Experimental Approach"
AGTAGAGGTGGGGTTTCACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCATCCACC
dot-bracket secondary structure
......(((((((..(((((.((..(((((((..(((.....)))))))))).)))))))..).))))))
SIMILARITIES| miRBase hsa-mir-1285-1: 0.00005 PMRD no hits microPC no hits | UniProt sp|Q8N2A0|CX062_HUMAN: 0.00008 RFAM Metazoa_SRP: 4e-24 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Reshmi G, Chandra SS, Babu VJ, Babu PS, Santhi WS, Ramachandran S, Lakshmi S, Nair AS, Pillai MR, Genomics. [Epub prior to print](2011)., "Identification and analysis of novel microRNAs from Fragile Sites of Human Cervical Cancer: Computational and Experimental Approach"
