ABOUT THIS RECORDspecies: Pan paniscus
miRNA family: mir-1
source: miRBase, original name: ppa-mir-1 (MI0002930)
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGTA miRNA* CATACTTCTTTATGTACCCATA mismatches: 1 bulges: 1 |
pre-miRNA
ACCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGGC
dot-bracket secondary structure
.((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
ACCTACTCAGAGTACATACTTCTTTATGTACCCATATGAACATACAATGCTATGGAATGTAAAGAAGTATGTATTTTTGGTAGGC
dot-bracket secondary structure
.((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))))))))).)))))).
SIMILARITIES| miRBase hsa-mir-1-2: 4e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 3e-32 |
Identical with: ptr-mir-1-2 from miRBase (MNEST030138) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
