ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: let-7
source: miRBase, original name: ptr-let-7e (MI0008403)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGGAGGTTGTATAGTT miRNA* CTATACGGCCTCCTAGCTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
CCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAGGACACCCAAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGG
dot-bracket secondary structure
..(((..(((.((((((((((((((((.((...((....)).......)))))))))))))))))).)))..)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CCGGGCTGAGGTAGGAGGTTGTATAGTTGAGGAGGACACCCAAGGAGATCACTATACGGCCTCCTAGCTTTCCCCAGG
dot-bracket secondary structure
..(((..(((.((((((((((((((((.((...((....)).......)))))))))))))))))).)))..)))...
SIMILARITIES| miRBase mml-let-7e: 5e-39 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 4e-37 |
Identical with: ppy-let-7e from miRBase (MNEST030737) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
