ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: let-7
source: miRBase, original name: ptr-let-7f-1 (MI0008404)
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGATTGTATAGTT miRNA* CTATACAATCTATTGCCTTCCC mismatches: 2 bulges: 0 |
pre-miRNA
CAGAGTGAGGTAGTAGATTGTATAGTTGTGGGGTAGTGATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGA
dot-bracket secondary structure
(((.(..(((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))..)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CAGAGTGAGGTAGTAGATTGTATAGTTGTGGGGTAGTGATTTTACCCTGTTCAGGAGATAACTATACAATCTATTGCCTTCCCTGA
dot-bracket secondary structure
(((.(..(((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))..)))).
SIMILARITIES| miRBase mdo-let-7f-1: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-37 |
Identical with: ppy-let-7f-1 from miRBase (MNEST030738) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
