ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-7
source: miRBase, original name: ptr-mir-7-3 (MI0002785)
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTGTTGT miRNA* AACAAGTCACAGCCGGCCTCA mismatches: 4 bulges: 2 |
pre-miRNA
AGATTAGAGTGGCTGTGGTCTAGTGCTGTGTGGAAGACTAGTGATTTTGTTGTTCTGATGTACTACGACAACAAGTCACAGCCGGCCTCATAGCGCAGAC
TCCCTTCGAC
dot-bracket secondary structure
......(((.((....(((((.((((((((.((..(.((.(((((((.((((((.((......)).))))))))))))))).)..)).))))))))))))
))).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
AGATTAGAGTGGCTGTGGTCTAGTGCTGTGTGGAAGACTAGTGATTTTGTTGTTCTGATGTACTACGACAACAAGTCACAGCCGGCCTCATAGCGCAGAC
TCCCTTCGAC
dot-bracket secondary structure
......(((.((....(((((.((((((((.((..(.((.(((((((.((((((.((......)).))))))))))))))).)..)).))))))))))))
))).)))...
SIMILARITIES| miRBase hsa-mir-7-3: 6e-58 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 2e-39 |
Identical with: ppa-mir-7-3 from miRBase (MNEST030039) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
