ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-10
source: miRBase, original name: ptr-mir-10b (MI0008411)
SEQUENCE & STRUCTURE| miRNA TACCCTGTAGAACCGAATTTGTG miRNA* CAGATTCGATTCTAGGGGAATA mismatches: 2 bulges: 1 |
pre-miRNA
CAGAGGTTGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGTATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCA
AAAACTTCA
dot-bracket secondary structure
..((((((....(((((.((((((((.((((.(((((.((((((((((..(((....)))...)))))))))).))))))))).)))))))).)))))..
..)))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CAGAGGTTGTAACGTTGTCTATATATACCCTGTAGAACCGAATTTGTGTGGTATCCGTATAGTCACAGATTCGATTCTAGGGGAATATATGGTCGATGCA
AAAACTTCA
dot-bracket secondary structure
..((((((....(((((.((((((((.((((.(((((.((((((((((..(((....)))...)))))))))).))))))))).)))))))).)))))..
..)))))).
SIMILARITIES| miRBase hsa-mir-10b: 3e-57 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 1e-28 |
Identical with: ppa-mir-10b from miRBase (MNEST030041) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
