ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-19
source: miRBase, original name: ptr-mir-19b-2 (MI0003113)
SEQUENCE & STRUCTURE| miRNA TGTGCAAATCCATGCAAAACTGA miRNA* AGTTTTGCAGGTTTGCATTTC mismatches: 1 bulges: 2 |
pre-miRNA
GACATTGCTACTTACAATTAGTTTTGCAGGTTTGCATTTCAGCGTATATATGTATATGTGGCTGTGCAAATCCATGCAAAACTGATTGTGATAATGT
dot-bracket secondary structure
.((((((....((((((((((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GACATTGCTACTTACAATTAGTTTTGCAGGTTTGCATTTCAGCGTATATATGTATATGTGGCTGTGCAAATCCATGCAAAACTGATTGTGATAATGT
dot-bracket secondary structure
.((((((....((((((((((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))))))))))))))))
SIMILARITIES| miRBase mml-mir-19b-2: 1e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-19: 1e-28 |
Identical with: ggo-mir-19b-2 from miRBase (MNEST028266) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
