ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-17
source: miRBase, original name: ptr-mir-20b (MI0008579)
SEQUENCE & STRUCTURE| miRNA CAAAGTGCTCATAGTGCAGGTAG miRNA* CTACTGTAGTATGGGCACTTCCAG mismatches: 5 bulges: 1 |
pre-miRNA
AGTACCAAAGTGCTCATAGTGCAGGTAGTTTTGGCATGACTCTACTGTAGTATGGGCACTTCCAGTAC
dot-bracket secondary structure
.((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
AGTACCAAAGTGCTCATAGTGCAGGTAGTTTTGGCATGACTCTACTGTAGTATGGGCACTTCCAGTAC
dot-bracket secondary structure
.((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))
SIMILARITIES| miRBase hsa-mir-20b: 4e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-17: 2e-29 |
Identical with: hsa-mir-20b from miRBase (MNEST028371) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
