ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-25
source: miRBase, original name: ptr-mir-25 (MI0003072)
SEQUENCE & STRUCTURE| miRNA CATTGCACTTGTCTCGGCTGA miRNA* GGCGGAGACTTGGGCAATTGCT mismatches: 6 bulges: 1 |
pre-miRNA
GGCCAGTGTTGAGAGGCGGAGACTTGGGCAATTGCTGGACGCTGCCCTGGGCATTGCACTTGTCTCGGCTGAGACGCGCCCGCC
dot-bracket secondary structure
(((..(((((....(((.(((((..(.(((((.(((((.......))..)))))))).)..))))).)))..)))))....)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GGCCAGTGTTGAGAGGCGGAGACTTGGGCAATTGCTGGACGCTGCCCTGGGCATTGCACTTGTCTCGGCTGAGACGCGCCCGCC
dot-bracket secondary structure
(((..(((((....(((.(((((..(.(((((.(((((.......))..)))))))).)..))))).)))..)))))....)))
SIMILARITIES| miRBase eca-mir-25: 5e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-25: 2e-29 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
