ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-27
source: miRBase, original name: ptr-mir-27a (MI0003049)
SEQUENCE & STRUCTURE| miRNA TTCACAGTGGCTAAGTTCCGCC miRNA* CAGGGCTTAGCTGCTTGTGAGCA mismatches: 4 bulges: 1 |
pre-miRNA
CTGAGGAGCAGGGCTTAGCTGCTTGTGAGCAGGGTCCACACCAAGTCGTGTTCACAGTGGCTAAGTTCCGCCCCCCAG
dot-bracket secondary structure
(((.((.((.(((((((((..((.(((((((.((.(........))).)))))))))..))))))))).)).)).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
CTGAGGAGCAGGGCTTAGCTGCTTGTGAGCAGGGTCCACACCAAGTCGTGTTCACAGTGGCTAAGTTCCGCCCCCCAG
dot-bracket secondary structure
(((.((.((.(((((((((..((.(((((((.((.(........))).)))))))))..))))))))).)).)).)))
SIMILARITIES| miRBase mml-mir-27a: 5e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-27: 1e-36 |
Identical with: mml-mir-27a from miRBase (MNEST027673) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
