ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-29
source: miRBase, original name: ptr-mir-29b-2 (MI0002732)
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAATCAGT miRNA* TGGTTTCACATGGTGGCTTAGA mismatches: 1 bulges: 2 |
pre-miRNA
GCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAG
dot-bracket secondary structure
)(((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GCTTCTGGAAGCTGGTTTCACATGGTGGCTTAGATTTTTCCATCTTTGTATCTAGCACCATTTGAAATCAGTGTTTTAGGAG
dot-bracket secondary structure
)(((((((((((((((((((.((((((.((.((((..............)))))))))))).)))))))))).)))))))))
SIMILARITIES| miRBase eca-mir-29b-2: 9.0E-41 PMRD no hits microPC no hits | UniProt no hits RFAM 9mir-29: 6.0E-27 |
Identical with: eca-mir-29b-2 from miRBase (MNEST026972), mml-mir-29b-2 from miRBase , hsa-mir-29b-2 from miRBase , mne-mir-29b from miRBase , ppy-mir-29b-2 from miRBase , sla-mir-29b from miRBase , cfa-mir-29b-2 from miRBase , ppa-mir-29b-2 from miRBase , ggo-mir-29b-2 from miRBase , bta-mir-29b-2 from miRBase , rno-mir-29b-2 from miRBase , mmu-mir-29b-2 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
