ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-30
source: miRBase, original name: ptr-mir-30c-1 (MI0008605)
SEQUENCE & STRUCTURE| miRNA TGTAAACATCCTACACTCTCAGC miRNA* TGGGAGAGGGTTGTTTACTCC mismatches: 3 bulges: 2 |
pre-miRNA
CCATGCTGTAGTGTGTGTAAACATCCTACACTCTCAGCTGTGAGCTCAAGGTGGCTGGGAGAGGGTTGTTTACTCCTTCTGCCATGGA
dot-bracket secondary structure
(((((..((((...(.(((((((.(((...(((((((((.((....))....))))))))).))).))))))).)...))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CCATGCTGTAGTGTGTGTAAACATCCTACACTCTCAGCTGTGAGCTCAAGGTGGCTGGGAGAGGGTTGTTTACTCCTTCTGCCATGGA
dot-bracket secondary structure
(((((..((((...(.(((((((.(((...(((((((((.((....))....))))))))).))).))))))).)...))))))))).
SIMILARITIES| miRBase eca-mir-30c: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-30: 1e-21 |
Identical with: eca-mir-30c from miRBase (MNEST026976) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
