ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-30
source: miRBase, original name: ptr-mir-30c-2 (MI0002923)
SEQUENCE & STRUCTURE| miRNA TGTAAACATCCTACACTCTCAGC miRNA* TGGGAGAAGGCTGTTTACTCT mismatches: 3 bulges: 2 |
pre-miRNA
AGATACTGTAAACATCCTACACTCTCAGCTGTGGAAAGTAAGAAAGCTGGGAGAAGGCTGTTTACTCTTTCT
dot-bracket secondary structure
(((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
AGATACTGTAAACATCCTACACTCTCAGCTGTGGAAAGTAAGAAAGCTGGGAGAAGGCTGTTTACTCTTTCT
dot-bracket secondary structure
(((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))
SIMILARITIES| miRBase lla-mir-30c: 2e-35 PMRD no hits microPC no hits | UniProt no hits RFAM mir-30: 1e-24 |
Identical with: lla-mir-30c from miRBase (MNEST027556) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
