ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-33
source: miRBase, original name: ptr-mir-33a (MI0002685)
SEQUENCE & STRUCTURE| miRNA GTGCATTGTAGTTGCATTG miRNA* ATGTTTCCACAGTGCATCA mismatches: 3 bulges: 0 |
pre-miRNA
CTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAG
dot-bracket secondary structure
((((((((((((((.(..((((((((((....((.....))))))))))))..).))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
CTGTGGTGCATTGTAGTTGCATTGCATGTTCTGGTGGTACCCATGCAATGTTTCCACAGTGCATCACAG
dot-bracket secondary structure
((((((((((((((.(..((((((((((....((.....))))))))))))..).))))))))))))))
SIMILARITIES| miRBase ggo-mir-33: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-33: 3e-22 |
Identical with: ppa-mir-33 from miRBase (MNEST030071) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
