ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-33
source: miRBase, original name: ptr-mir-33b (MI0008627)
SEQUENCE & STRUCTURE| miRNA GTGCATTGCTGTTGCATTGC miRNA* AGTGCCTCGGCAGTGCAGCCC mismatches: 2 bulges: 1 |
pre-miRNA
CGGGCGGCCCCGCGGTGCATTGCTGTTGCATTGCACGTGTGTGAGGCGGGTGCAGTGCCTCGGCAGTGCAGCCCGGAGCCGGCCCCTGGCACCAC
dot-bracket secondary structure
.(((((((.(((.((((((((((((..(((((((((.(((.....))).)))))))))..)))))))))).))))).))).))))..........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CGGGCGGCCCCGCGGTGCATTGCTGTTGCATTGCACGTGTGTGAGGCGGGTGCAGTGCCTCGGCAGTGCAGCCCGGAGCCGGCCCCTGGCACCAC
dot-bracket secondary structure
.(((((((.(((.((((((((((((..(((((((((.(((.....))).)))))))))..)))))))))).))))).))).))))..........
SIMILARITIES| miRBase hsa-mir-33b: 5e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-33: 1e-28 |
Identical with: hsa-mir-33b from miRBase (MNEST028400) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
