ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-105
source: miRBase, original name: ptr-mir-105 (MI0002749)
SEQUENCE & STRUCTURE| miRNA TCAAATGCTCAGACTCCTGT miRNA* GGATGTTTGAGCATGTGCTA mismatches: 4 bulges: 0 |
pre-miRNA
TGTGCATCGTGGTCAAATGCTCAGACTCCTGTGGTGGCTGCTTATGCACCACGGATGTTTGAGCATGTGCTATGGTGTCTA
dot-bracket secondary structure
...(((((((((.((.((((((((((..((((((((.(.......)))))))))..)))))))))).)))))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TGTGCATCGTGGTCAAATGCTCAGACTCCTGTGGTGGCTGCTTATGCACCACGGATGTTTGAGCATGTGCTATGGTGTCTA
dot-bracket secondary structure
...(((((((((.((.((((((((((..((((((((.(.......)))))))))..)))))))))).)))))))))))...
SIMILARITIES| miRBase mml-mir-105-2: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-105: 2e-32 |
Identical with: ppy-mir-105-2 from miRBase (MNEST030810) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
