ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-125
source: miRBase, original name: ptr-mir-125a (MI0008464)
SEQUENCE & STRUCTURE| miRNA ACAGGTGAGGTTCTTGGGAGCC miRNA* TCCCTGAGACCCTTTAACCTGTGA mismatches: 5 bulges: 2 |
pre-miRNA
GCCAGTCTCTAGGTCCCTGAGACCCTTTAACCTGTGAGGACATCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGGTGTCTGGCC
dot-bracket secondary structure
(((((.(.(((((..((..(((.((((..((((((((((....))....)))))))))))).)))..))..))))).).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GCCAGTCTCTAGGTCCCTGAGACCCTTTAACCTGTGAGGACATCCAGGGTCACAGGTGAGGTTCTTGGGAGCCTGGTGTCTGGCC
dot-bracket secondary structure
(((((.(.(((((..((..(((.((((..((((((((((....))....)))))))))))).)))..))..))))).).))))).
SIMILARITIES| miRBase hsa-mir-125a: 1e-40 PMRD no hits microPC no hits | UniProt no hits RFAM lin-4: 4e-25 |
Identical with: cfa-mir-125a from miRBase (MNEST026689) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
