ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-127
source: miRBase, original name: ptr-mir-127 (MI0002583)
SEQUENCE & STRUCTURE| miRNA TCGGATCCGTCTGAGCTTGGCT miRNA* CCTGCTGAAGCTCAGAGGGCTCTGATT mismatches: 2 bulges: 5 |
pre-miRNA
TGTGATCACTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGGAAGTCTCATCATC
dot-bracket secondary structure
((.(((..(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))..))).)).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TGTGATCACTGTCTCCAGCCTGCTGAAGCTCAGAGGGCTCTGATTCAGAAAGATCATCGGATCCGTCTGAGCTTGGCTGGTCGGAAGTCTCATCATC
dot-bracket secondary structure
((.(((..(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))..))).)).....
SIMILARITIES| miRBase age-mir-127: 3e-50 PMRD no hits microPC no hits | UniProt no hits RFAM mir-127: 2e-33 |
Identical with: sla-mir-127 from miRBase (MNEST027616) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
