ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-128
source: miRBase, original name: ptr-mir-128-1 (MI0002519)
SEQUENCE & STRUCTURE| miRNA TCACAGTGAACCGGTCTCTTT miRNA* CGGGGCCGTAGCACTGTCTGAGA mismatches: 6 bulges: 2 |
pre-miRNA
TGAGCTGTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTC
dot-bracket secondary structure
.((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TGAGCTGTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTC
dot-bracket secondary structure
.((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).)))).
SIMILARITIES| miRBase age-mir-128: 2e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-128: 6e-33 |
Identical with: sla-mir-128 from miRBase (MNEST027617) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
