ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-130
source: miRBase, original name: ptr-mir-130a (MI0008527)
SEQUENCE & STRUCTURE| miRNA CAGTGCAATGTTAAAAGGGCAT miRNA* GCTCTTTTCACATTGTGCTACT mismatches: 5 bulges: 0 |
pre-miRNA
GCTGCTGGCCAGAGCTCTTTTCACATTGTGCTACTGTCTGCACCTGTCACTAGCAGTGCAATGTTAAAAGGGCATTGGCCGTGTAGTG
dot-bracket secondary structure
((((((((((((.((((((((.((((((..((.(((...((....))...))).))..)))))).)))))))).))))))).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GCTGCTGGCCAGAGCTCTTTTCACATTGTGCTACTGTCTGCACCTGTCACTAGCAGTGCAATGTTAAAAGGGCATTGGCCGTGTAGTG
dot-bracket secondary structure
((((((((((((.((((((((.((((((..((.(((...((....))...))).))..)))))).)))))))).))))))).))))).
SIMILARITIES| miRBase mne-mir-130a: 7e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-130: 1e-37 |
Identical with: ppa-mir-130a from miRBase (MNEST030090) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
