ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-130
source: miRBase, original name: ptr-mir-130b (MI0008528)
SEQUENCE & STRUCTURE| miRNA CAGTGCAATGATGAAAGGGCAT miRNA* ACTCTTTCCCTGTTGCACTACT mismatches: 5 bulges: 0 |
pre-miRNA
GCCTGCCCGACACTCTTTCCCTGTTGCACTACTATGGGCCGCTGGGAAGCAGTGCAATGATGAAAGGGCATCGGTCAGGTC
dot-bracket secondary structure
(((((.((((..(((((((..(((((((((.((.....((....)).)).)))))))))..)))))))..)))).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GCCTGCCCGACACTCTTTCCCTGTTGCACTACTATGGGCCGCTGGGAAGCAGTGCAATGATGAAAGGGCATCGGTCAGGTC
dot-bracket secondary structure
(((((.((((..(((((((..(((((((((.((.....((....)).)).)))))))))..)))))))..)))).))))).
SIMILARITIES| miRBase ppy-mir-130b: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-130: 2e-26 |
Identical with: ppy-mir-130b from miRBase (MNEST030828) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
