ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-133
source: miRBase, original name: ptr-mir-133b (MI0008534)
SEQUENCE & STRUCTURE| miRNA TTTGGTCCCCTTCAACCAGCTA miRNA* GCTGGTCAAACGGAACCAAGTC mismatches: 4 bulges: 0 |
pre-miRNA
CTCAGAAGAAAGATGCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGCA
ATGCCCAGTCCTTGGAGA
dot-bracket secondary structure
(((.((.((..(.(((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..))))
...)....)).)).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CTCAGAAGAAAGATGCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCTGGCA
ATGCCCAGTCCTTGGAGA
dot-bracket secondary structure
(((.((.((..(.(((((((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..))))
...)....)).)).))).
SIMILARITIES| miRBase hsa-mir-133b: 1e-62 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 2e-43 |
Identical with: eca-mir-133b from miRBase (MNEST027027) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
