ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-135
source: miRBase, original name: ptr-mir-135a-1 (MI0008536)
SEQUENCE & STRUCTURE| miRNA TATGGCTTTTTATTCCTATGTGA miRNA* ATATAGGGATTGGAGCCGTGGC mismatches: 1 bulges: 1 |
pre-miRNA
AGGCCTCGCTGTTCTCTATGGCTTTTTATTCCTATGTGATTCTACTGCTCACTCATATAGGGATTGGAGCCGTGGCGCACGGCGGGGAC
dot-bracket secondary structure
...(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
AGGCCTCGCTGTTCTCTATGGCTTTTTATTCCTATGTGATTCTACTGCTCACTCATATAGGGATTGGAGCCGTGGCGCACGGCGGGGAC
dot-bracket secondary structure
...(((((((((.(.((((((((((..((((((((((((.............)))))))))))).)))))))))).).)))))))))..
SIMILARITIES| miRBase age-mir-135-1: 2e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-135: 5e-43 |
Identical with: mml-mir-135a-1 from miRBase (MNEST027735) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
