ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-139
source: miRBase, original name: ptr-mir-139 (MI0008540)
SEQUENCE & STRUCTURE| miRNA GGAGACGCGGCCCTGTTGGAGT miRNA* TCTACAGTGCACGTGTCTCCAG mismatches: 1 bulges: 2 |
pre-miRNA
GTGTATTCTACAGTGCACGTGTCTCCAGTGTGGCTCGGAGGCTGGAGACGCGGCCCTGTTGGAGTAA
dot-bracket secondary structure
...((((((((((.((.((((((((((((.(.......).)))))))))))))).))).))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GTGTATTCTACAGTGCACGTGTCTCCAGTGTGGCTCGGAGGCTGGAGACGCGGCCCTGTTGGAGTAA
dot-bracket secondary structure
...((((((((((.((.((((((((((((.(.......).)))))))))))))).))).))))))).
SIMILARITIES| miRBase lla-mir-139: 2e-32 PMRD no hits microPC no hits | UniProt no hits RFAM mir-139: 2e-26 |
Identical with: rno-mir-139 from miRBase (MNEST032744) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
