ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-140
source: miRBase, original name: ptr-mir-140 (MI0002547)
SEQUENCE & STRUCTURE| miRNA AGTGGTTTTACCCTATGGTAG miRNA* ACCACAGGGTAGAACCACGGA mismatches: 2 bulges: 0 |
pre-miRNA
TGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGATACCGGGGCACC
dot-bracket secondary structure
.(((((((.....((((((((((.(((((((((((((.(((((((..(((......)))))))))).))))))))))))))).)))))))).))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
TGTGTCTCTCTCTGTGTCCTGCCAGTGGTTTTACCCTATGGTAGGTTACGTCATGCTGTTCTACCACAGGGTAGAACCACGGACAGGATACCGGGGCACC
dot-bracket secondary structure
.(((((((.....((((((((((.(((((((((((((.(((((((..(((......)))))))))).))))))))))))))).)))))))).))))))).
SIMILARITIES| miRBase mml-mir-140: 5e-52 PMRD no hits microPC no hits | UniProt no hits RFAM mir-140: 5e-40 |
Identical with: ssc-mir-140 from miRBase (MNEST033990) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
