ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-142
source: miRBase, original name: ptr-mir-142 (MI0008543)
SEQUENCE & STRUCTURE| miRNA TGTAGTGTTTCCTACTTTATGGA miRNA* CATAAAGTAGAAAGCACTACTAA mismatches: 3 bulges: 0 |
pre-miRNA
GACAGTGCAGTCACCCATAAAGTAGAAAGCACTACTAACAGCACTGGAGGGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGT
dot-bracket secondary structure
.((((((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GACAGTGCAGTCACCCATAAAGTAGAAAGCACTACTAACAGCACTGGAGGGTGTAGTGTTTCCTACTTTATGGATGAGTGTACTGT
dot-bracket secondary structure
.((((((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).))))))))
SIMILARITIES| miRBase mml-mir-142: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-142: 7e-42 |
Identical with: rno-mir-142 from miRBase (MNEST032747) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
