ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-148
source: miRBase, original name: ptr-mir-148b (MI0008548)
SEQUENCE & STRUCTURE| miRNA TCAGTGCATCACAGAACTTTGT miRNA* GAAGTTCTGTTATACACTCAGGCT mismatches: 4 bulges: 2 |
pre-miRNA
CAAGCACGATTAGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCTTTCT
dot-bracket secondary structure
.......((..(((.(((((((..(((((((((.((.((((..((((....(.....)..)))))))).)).)))))))))..))))))).))).)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CAAGCACGATTAGCATTTGAGGTGAAGTTCTGTTATACACTCAGGCTGTGGCTCTCTGAAAGTCAGTGCATCACAGAACTTTGTCTCGAAAGCTTTCT
dot-bracket secondary structure
.......((..(((.(((((((..(((((((((.((.((((..((((....(.....)..)))))))).)).)))))))))..))))))).))).)).
SIMILARITIES| miRBase mml-mir-148b: 8e-51 PMRD no hits microPC no hits | UniProt no hits RFAM mir-148: 1e-40 |
Identical with: ssc-mir-148b from miRBase (MNEST033999) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
