ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-149
source: miRBase, original name: ptr-mir-149 (MI0008549)
SEQUENCE & STRUCTURE| miRNA TCTGGCTCCGTGTCTTCACTCCC miRNA* GAGGGAGGGACGGGGGCTGTGC mismatches: 4 bulges: 1 |
pre-miRNA
CCGGCGCCCGAGCTCTGGCTCCGTGTCTTCACTCCCGTGCTTGTCCGAGGAGGGAGGGAGGGACGGGGGCTGTGCTGGGGC
dot-bracket secondary structure
.....((((.(((.(.(.((((((.(((((.(((((.(.(((....))).))))))))))).)))))).).).))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CCGGCGCCCGAGCTCTGGCTCCGTGTCTTCACTCCCGTGCTTGTCCGAGGAGGGAGGGAGGGACGGGGGCTGTGCTGGGGC
dot-bracket secondary structure
.....((((.(((.(.(.((((((.(((((.(((((.(.(((....))).))))))))))).)))))).).).))).))))
SIMILARITIES| miRBase hsa-mir-149: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-149: 1e-27 |
Identical with: hsa-mir-149 from miRBase (MNEST028473) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
