ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-181
source: miRBase, original name: ptr-mir-181a-2 (MI0002807)
SEQUENCE & STRUCTURE| miRNA AACATTCAACGCTGTCGGTGAGT miRNA* CACTGACCGTTGACTGTACC mismatches: 2 bulges: 3 |
pre-miRNA
AGAAGGGCTATCAGGCCAGCCTTCAGAGGACTCCAAGGAACATTCAACGCTGTCGGTGAGTTTGGGATTTGAAAAAACCACTGACCGTTGACTGTACCTT
GGGGTCCTTA
dot-bracket secondary structure
.((((((((....)))...))))).(((((((((((((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))))
))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
AGAAGGGCTATCAGGCCAGCCTTCAGAGGACTCCAAGGAACATTCAACGCTGTCGGTGAGTTTGGGATTTGAAAAAACCACTGACCGTTGACTGTACCTT
GGGGTCCTTA
dot-bracket secondary structure
.((((((((....)))...))))).(((((((((((((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))))
))))))))).
SIMILARITIES| miRBase hsa-mir-181a-2: 6e-58 PMRD no hits microPC no hits | UniProt no hits RFAM mir-181: 3e-29 |
Identical with: ppy-mir-181a-2 from miRBase (MNEST030866) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
