ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-15
source: miRBase, original name: ptr-mir-195 (MI0008568)
SEQUENCE & STRUCTURE| miRNA TAGCAGCACAGAAATATTGGC miRNA* CAATATTGGCTGTGCTGCTCCA mismatches: 2 bulges: 1 |
pre-miRNA
AGCTTCCCTGGCTCTAGCAGCACAGAAATATTGGCACAGGGAAGCGAGTCTGCCAATATTGGCTGTGCTGCTCCAGGCAGGGTGGT
dot-bracket secondary structure
.(((.(((((.((..((((((((((.((((((((((..............))))))))))..))))))))))..)).))))).)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
AGCTTCCCTGGCTCTAGCAGCACAGAAATATTGGCACAGGGAAGCGAGTCTGCCAATATTGGCTGTGCTGCTCCAGGCAGGGTGGT
dot-bracket secondary structure
.(((.(((((.((..((((((((((.((((((((((..............))))))))))..))))))))))..)).))))).)))
SIMILARITIES| miRBase hsa-mir-195: 1e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-16: 2e-27 |
Identical with: hsa-mir-195 from miRBase (MNEST028506) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
