ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-196
source: miRBase, original name: ptr-mir-196a-1 (MI0008569)
SEQUENCE & STRUCTURE| miRNA TAGGTAGTTTCATGTTGTTGGG miRNA* ACAACAACATTAAACCACCCGAT mismatches: 5 bulges: 1 |
pre-miRNA
TGAATTAGGTAGTTTCATGTTGTTGGGCCTGGGTTTCTGAACACAACAACATTAAACCACCCGATTCAC
dot-bracket secondary structure
(((((..(((.((((.((((((((((..(.........)..).))))))))).)))).)))..))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TGAATTAGGTAGTTTCATGTTGTTGGGCCTGGGTTTCTGAACACAACAACATTAAACCACCCGATTCAC
dot-bracket secondary structure
(((((..(((.((((.((((((((((..(.........)..).))))))))).)))).)))..))))).
SIMILARITIES| miRBase mml-mir-196a-1: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-196: 1e-27 |
Identical with: hsa-mir-196a-1 from miRBase (MNEST028507) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
