ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-199
source: miRBase, original name: ptr-mir-199b (MI0008572)
SEQUENCE & STRUCTURE| miRNA ACAGTAGTCTGCACATTGGTTA miRNA* CCCAGTGTTTAGACTATCTGTTC mismatches: 2 bulges: 1 |
pre-miRNA
CCAGAGGACACCTCCACTCCGTCTACCCAGTGTTTAGACTATCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTT
AGACCCTCG
dot-bracket secondary structure
...((((.....((((..(((((((.(((((((.(((((((.((((.((((....))....)).))))))))))).))))))).))))).))..))))..
....)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CCAGAGGACACCTCCACTCCGTCTACCCAGTGTTTAGACTATCTGTTCAGGACTCCCAAATTGTACAGTAGTCTGCACATTGGTTAGGCTGGGCTGGGTT
AGACCCTCG
dot-bracket secondary structure
...((((.....((((..(((((((.(((((((.(((((((.((((.((((....))....)).))))))))))).))))))).))))).))..))))..
....)))).
SIMILARITIES| miRBase hsa-mir-199b: 3e-57 PMRD no hits microPC no hits | UniProt no hits RFAM mir-199: 2e-49 |
Identical with: ssc-mir-199b from miRBase (MNEST034032) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
