ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-8
source: miRBase, original name: ptr-mir-200a (MI0008573)
SEQUENCE & STRUCTURE| miRNA TAACACTGTCTGGTAACGATGT miRNA* ATCTTACCGGACAGTGCTGGA mismatches: 4 bulges: 1 |
pre-miRNA
CGGGCCCCTGTGAGCATCTTACCGGACAGTGCTGGATTTCCCAGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCGC
dot-bracket secondary structure
(((((.(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).))).).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CGGGCCCCTGTGAGCATCTTACCGGACAGTGCTGGATTTCCCAGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCGC
dot-bracket secondary structure
(((((.(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).))).).)))).
SIMILARITIES| miRBase hsa-mir-200a: 2e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-8: 1e-28 |
Identical with: hsa-mir-200a from miRBase (MNEST028518) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
