ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-204
source: miRBase, original name: ptr-mir-211 (MI0008581)
SEQUENCE & STRUCTURE| miRNA TTCCCTTTGTCATCCTTCGCCT miRNA* GCAGGGACAGCAAAGGGGTGC mismatches: 3 bulges: 1 |
pre-miRNA
TCACCTGGCCATGTGACTTGTGGGCTTCCCTTTGTCATCCTTCGCCTAGGGCTCTGAGCAGGGCAGGGACAGCAAAGGGGTGCTCAGTTGTCACTTCCCA
CAGCACGGA
dot-bracket secondary structure
....(((.....(((((...(((((.(((((((((..(((((.((((...((.....)).)))))))))..))))))))).)))))...)))))......
)))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TCACCTGGCCATGTGACTTGTGGGCTTCCCTTTGTCATCCTTCGCCTAGGGCTCTGAGCAGGGCAGGGACAGCAAAGGGGTGCTCAGTTGTCACTTCCCA
CAGCACGGA
dot-bracket secondary structure
....(((.....(((((...(((((.(((((((((..(((((.((((...((.....)).)))))))))..))))))))).)))))...)))))......
)))......
SIMILARITIES| miRBase hsa-mir-211: 3e-57 PMRD no hits microPC no hits | UniProt no hits RFAM mir-204: 1e-44 |
Identical with: hsa-mir-211 from miRBase (MNEST028529) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
