ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-218
source: miRBase, original name: ptr-mir-218-1 (MI0002873)
SEQUENCE & STRUCTURE| miRNA TTGTGCTTGATCTAACCATGT miRNA* ATGGTTCCGTCAAGCACCATG mismatches: 3 bulges: 0 |
pre-miRNA
GTGATAATGTAGCGAGATTTTCTGTTGTGCTTGATCTAACCATGTGGTTGCGAGGTATGAGTAAAACATGGTTCCGTCAAGCACCATGGAACGTCACGCA
GCTTTCTACA
dot-bracket secondary structure
(((..((.((.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).))).
))))..))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GTGATAATGTAGCGAGATTTTCTGTTGTGCTTGATCTAACCATGTGGTTGCGAGGTATGAGTAAAACATGGTTCCGTCAAGCACCATGGAACGTCACGCA
GCTTTCTACA
dot-bracket secondary structure
(((..((.((.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).))).
))))..))).
SIMILARITIES| miRBase age-mir-218: 6e-58 PMRD no hits microPC no hits | UniProt no hits RFAM mir-218: 2e-43 |
Identical with: ppy-mir-218-1 from miRBase (MNEST030912) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
