ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-219
source: miRBase, original name: ptr-mir-219-1 (MI0008584)
SEQUENCE & STRUCTURE| miRNA TGATTGTCCAAACGCAATTCT miRNA* AGTTGAGTCTGGACGTCCCG mismatches: 3 bulges: 1 |
pre-miRNA
CGCCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTATGGCTCCGGCTGAGAGTTGAGTCTGGACGTCCCGAGCCGCCGCCCCCAAACC
TCGAGCGG
dot-bracket secondary structure
(((.(.((((.(((((((..(((.(((((.((.((((((((.((((.........)))))))))))).)).))))))))..))))))).)))).......
..).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
CGCCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTATGGCTCCGGCTGAGAGTTGAGTCTGGACGTCCCGAGCCGCCGCCCCCAAACC
TCGAGCGG
dot-bracket secondary structure
(((.(.((((.(((((((..(((.(((((.((.((((((((.((((.........)))))))))))).)).))))))))..))))))).)))).......
..).))).
SIMILARITIES| miRBase ptr-mir-219-1: 1e-56 PMRD no hits microPC no hits | UniProt no hits RFAM mir-219: 8e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
