ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-219
source: miRBase, original name: ptr-mir-219-2 (MI0008585)
SEQUENCE & STRUCTURE| miRNA TGATTGTCCAAACGCAATTCT miRNA* AATTGTGGCTGGACATCTGT mismatches: 3 bulges: 1 |
pre-miRNA
ACTCAGGGGCTTCGCCACTGATTGTCCAAACGCAATTCTTGTACGAGTCTGCGGCCAACCGAGAATTGTGGCTGGACATCTGTGGCTGAGCTCCGG
dot-bracket secondary structure
.....(((((((.(((((.(((.(((((..(((((((((((...(.((.....)))...)))))))))))..)))))))).))))).)))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
ACTCAGGGGCTTCGCCACTGATTGTCCAAACGCAATTCTTGTACGAGTCTGCGGCCAACCGAGAATTGTGGCTGGACATCTGTGGCTGAGCTCCGG
dot-bracket secondary structure
.....(((((((.(((((.(((.(((((..(((((((((((...(.((.....)))...)))))))))))..)))))))).))))).)))))))..
SIMILARITIES| miRBase eca-mir-219-2: 1e-49 PMRD no hits microPC no hits | UniProt no hits RFAM mir-219: 1e-34 |
Identical with: ppy-mir-219-2 from miRBase (MNEST030915) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
