ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-221
source: miRBase, original name: ptr-mir-221 (MI0008587)
SEQUENCE & STRUCTURE| miRNA AGCTACATTGTCTGCTGGGTTTC miRNA* ACCTGGCATACAATGTAGATTTCTGT mismatches: 3 bulges: 5 |
pre-miRNA
TGAACATCCAGGTCTGGGGCATGAACCTGGCATACAATGTAGATTTCTGTGTTCGTTAGGCAACAGCTACATTGTCTGCTGGGTTTCAGGCTACCTGGAA
ACATGTTCT
dot-bracket secondary structure
.((((((((((((....(((.((((((..(((.(((((((((....(((((((.....))).))))))))))))).)))..)).)))).)))))))))).
...))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
TGAACATCCAGGTCTGGGGCATGAACCTGGCATACAATGTAGATTTCTGTGTTCGTTAGGCAACAGCTACATTGTCTGCTGGGTTTCAGGCTACCTGGAA
ACATGTTCT
dot-bracket secondary structure
.((((((((((((....(((.((((((..(((.(((((((((....(((((((.....))).))))))))))))).)))..)).)))).)))))))))).
...))))).
SIMILARITIES| miRBase mml-mir-221: 3e-57 PMRD no hits microPC no hits | UniProt no hits RFAM mir-221: 8e-27 |
Identical with: ppy-mir-221 from miRBase (MNEST030916) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
