ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-223
source: miRBase, original name: ptr-mir-223 (MI0002898)
SEQUENCE & STRUCTURE| miRNA TGTCAGTTTGTCAAATACCCC miRNA* TGTATTTGACAAGCTGAGTTGGACACT mismatches: 2 bulges: 6 |
pre-miRNA
CCTGGCCTCCTGCAGTGCCACGCTCCGTGTATTTGACAAGCTGAGTTGGACACTCCATGTGGTAGAGTGTCAGTTTGTCAAATACCCCAAGTGCGGCACA
TGCTTACCAG
dot-bracket secondary structure
.((((......((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).
)))...))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
CCTGGCCTCCTGCAGTGCCACGCTCCGTGTATTTGACAAGCTGAGTTGGACACTCCATGTGGTAGAGTGTCAGTTTGTCAAATACCCCAAGTGCGGCACA
TGCTTACCAG
dot-bracket secondary structure
.((((......((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).
)))...))))
SIMILARITIES| miRBase ggo-mir-223: 6e-58 PMRD no hits microPC no hits | UniProt no hits RFAM mir-223: 4e-50 |
Identical with: ppa-mir-223 from miRBase (MNEST030124) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
