ABOUT THIS RECORDspecies: Pan troglodytes
miRNA family: mir-154
source: miRBase, original name: ptr-mir-300 (MI0008596)
SEQUENCE & STRUCTURE| miRNA TATACAAGGGCAGACTCTCTCT miRNA* AGAGAGGTAATCCTTCATGCAT mismatches: 11 bulges: 0 |
pre-miRNA
GCTACTTGAAGAGAGGTAATCCTTCATGCATTTGCTTTACTTGCAATGATTATACAAGGGCAGACTCTCTCTGGGGAGCAAA
dot-bracket secondary structure
(((.(((..((((((....(((((....((((.((.......)))))).......)))))....))))))..))).)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
GCTACTTGAAGAGAGGTAATCCTTCATGCATTTGCTTTACTTGCAATGATTATACAAGGGCAGACTCTCTCTGGGGAGCAAA
dot-bracket secondary structure
(((.(((..((((((....(((((....((((.((.......)))))).......)))))....))))))..))).)))...
SIMILARITIES| miRBase ppy-mir-300: 2e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 6e-36 |
Identical with: ppy-mir-300 from miRBase (MNEST030926) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Baev V, Daskalova E, Minkov I, Comput Biol Chem. 33:62-70(2009)., "Computational identification of novel microRNA homologs in the chimpanzee genome"
